Showing posts with label GREEN Egineering. Show all posts
Showing posts with label GREEN Egineering. Show all posts

Sunday, September 16, 2007

New frontier for DNA team: A bar code for every animal


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Step into a forest in southern Ontario and a dizzying array of diversity pummels the senses: ferns line a stream, songbirds flit overhead, lichen pepper a tree stump, a mosquito finds the soft flesh on your arm.


Unless you have a degree in taxonomy, identifying all of the flora and fauna is an insurmountable task.


University of Guelph scientists hope to change that using something retail stores have relied on for years: bar codes. Researchers at the Biodiversity Institute of Ontario are starting to assign a unique DNA identifier in the form of a genetic bar code to every animal species on the planet.


They are not alone in their quest. Since the idea was first published in 2003 by University of Guelph professor Paul Hebert, DNA bar coding has been adopted by 160 organizations in 50 countries and more than 31,000 species have been coded.


Experts believe it has a host of applications, from catching agricultural pests at the border to quickly identifying disease-carrying mosquitos.


It will help researchers discover species and trace evolutionary patterns, says David Schindel, executive secretary of the Consortium for the Barcode of Life, at the Smithsonian Institution in Washington, D.C. and host of next week's second international Barcode of Life conference in Taipei.


Scientists are bar-coding as many species as possible in an effort to create a global reference library, says Schindel.


Much like a fingerprint database, DNA bar-coding only works if there is a comprehensive catalogue from which to compare samples.


Barcoding will soon allow scientists to quickly identify hard-to-distinguish species within hours, rather than days. Taxonomists usually use physical characteristics, such as colour markings, to classify an animal. But that won't always work; scientists may only have a small piece of an organism to work with.


When dead birds carrying avian flu washed up on the shores of Scotland, it took weeks to identify the species as swans because they were so decomposed, Schindel says.


"If we could have bar-coded the species, we would have known what they were within a day and, possibly, where they came from," he says. "It would have been a big help for public health officials."


Hebert, who holds a Canada Research Chair in molecular biology, had long thought DNA could be used to identify species.


Scanning an animal's entire genome would cost too much and take too long, so he pinpointed a short piece of DNA - a section of a gene called cytochrome c oxidase 1, or CO1 - that could distinguish one animal from an other. It was a successful hunch, though it can't be used for plants.


"The results of the first wave of studies have been so positive that the plan to bar code all life is simply irresistible," Hebert wrote in an email while travelling in Korea.


He believes 500,000 animal species will be bar-coded within five years.


The Biodiversity Institute of Ontario, which opened in May, houses the world's leading DNA bar-code facility. Robert Hanner, an assistant professor at the University of Guelph and co-ordinator of the Fish Barcode of Life Campaign, says the lab is able to code between 12,000 and 20,000 samples a month, for $2 a sample.


Agricultural groups have approached them to bar-code insects that affect Ontario crops, he says.


Critics say DNA bar-coding isn't nearly as accurate as promised.


Felix Sperling, a biology professor at the University of Alberta, points out bar coding seems to work best for identifying species, such as birds, that are easy to distinguish by physical characteristics.


It does not work as well for other plant and animal groups, such as lichen, fungi and parasitic insects, he adds.


That doesn't bother Spencer Barrett, a University of Toronto professor of evolutionary biology, who is looking for a piece of DNA that can be used to distinguish plant species.


"The next big frontier, the next big scientific question, is to identify all of the biodiversity on Earth," he says, noting only 1.7 million species have been named of some 20 million to 30 million species.


HOW IT WORKS



Scientists only need DNA from a single gene to identify most species of animals on Earth.


• First, a tissue sample is collected and sent to a lab, where DNA can be extracted.


• The target piece of DNA - a portion of a gene called cytochrome c oxidase 1 (CO1) - is copied many times, using a technique called polymerase chain reaction.


• The copies are sequenced to determine the exact order of the four base pairs (A,T,C,G) within the strand of DNA, which generates the specific barcode for that species.


• The barcode information, along with the animal's taxonomic name, photos, GPS co-ordinates of where it was found, and other distinguishing characteristics, are entered into the Barcode of Life data system. It's accessible to anyone at www.barcodinglife.org.




PROMISING APPLICATIONS



• Quickly identifying species of mosquitos that carry diseases, including those that carry West Nile virus or malaria.


• Checking for consumer products made from endangered plants or animals.


• Identifying invasive insect pests on agricultural shipments going in and out of Canada


• Environmental monitoring - mapping how birds shift breeding territories in response to global warming, for example.


• Tracing unwanted plant and animal ingredients in foods.






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Thursday, August 30, 2007

'Go Green' In Data Centers, Says Study


.Green era opens doors for firm
GeoInsight takes proactive stance




John A. Gilbert, CEO of GeoInsight, an environmental and engineering consulting firm, in his Manchester, N.H., office.


John A. Gilbert, CEO of GeoInsight, an environmental and engineering consulting firm, in his Manchester, N.H., office. (JOANNE RATHE/GLOBE STAFF)






In his 14 years as founder and chief executive of GeoInsight Inc., an environmental and engineering consulting firm, John A. Gilbert has seen a big change in the way business is conducted.




"For years, [federal and state] regulatory revisions had driven this industry," Gilbert, 50, recalled last week during an interview in the firm's Manchester, N.H., corporate offices. "But now, companies and organizations are focusing more on environmental management, looking at ways of heading off problems and reducing costs."


Although this is clearly a green era, there are still many companies that don't want to discuss publicly how they are addressing environmental problems, Gilbert acknowledged. But things are moving in the right "environmentally friendly direction," he said.


His small firm's goal, which he said it is achieving, is to work with clients as partners on environmental quality concerns.


And as the firm has become better known for its work in New England, annual revenues are on the rise, hitting the $10 million mark last year, Gilbert said, adding that revenues are now increasing between 15 and 20 percent a year.


But it hasn't always been easy street.


"At one time, we found that we weren't being taken seriously because we were perceived to be too small," Gilbert said. "But that's changed."


Similarly sized environmental consulting firms are the competition today rather than giants like Cambridge-based CDM, which, he said, have largely become federal government contractors.


GeoInsight has 35 employees in Manchester, 14 employees in Westford, Mass., and 13 employees in Cheshire, Conn.


One of the environmental consulting industry's biggest challenges in recent years has been finding quality people with experience, Gilbert said. In some cases, he added, "we find strong entry-level people and bring them along as fast as we can."


Approximately 50 percent of GeoInsight's projects are in Massachusetts, according to Gilbert and Michael C. Penney, 45, a senior associate-senior engineer and manager of the Manchester operation. The rest are in Connecticut (25 percent), New Hampshire (20), and Rhode Island, Vermont, Maine, and New York.


Each year, the firm handles between 300 and 400 projects, Gilbert said. Since its founding in 1993 in Londonderry, N.H., GeoInsight has worked on more than 3,000 projects, he said. Most of the clients have been in the private sector, but there also have been some public sector customers such as municipalities.


"For a small firm, we now cover a lot of ground and are perhaps best known for our assessments of contaminated sites," in terms of air and water quality and other issues, said Gilbert, who grew up in Concord, Mass., and now lives in Concord, N.H.


A number of those sites have been Superfund properties, or those cited by the US Environmental Protection Agency as being the most severely polluted.


Gilbert said GeoInsight's first project involved the Savage Well Superfund site in Milford, N.H. Among the firm's clients currently for Superfund site work are the town of Wilmington, Mass., for the Olin Chemical property, and the Citizens Research and Environmental Watch group, or CREW, of Concord, Mass., for the
complex.


"We are very satisfied with the technical advice we've been getting from GeoInsight for the last five years," said James West, technical assistance coordinator for CREW, which receives federal grants for its Starmet-site monitoring work. "Unlike some other firms, they are very experienced in Superfund site work, particularly in the area of hydrology," West said.


One of the most complicated projects handled by GeoInsight, Gilbert pointed out, dealt with drilling a water main under the Thames River in Connecticut to increase the water supply for the Mohegan Sun Casino, the town of Montville, where the casino is, and surrounding communities. The project was completed early last year, he said.


While overseeing complicated as well as more straightforward projects, Gilbert said he is also committed to what he calls GeoInsight's "inner ownership.


"I started the firm because I wanted to run my own business after being a field engineer. But I also wanted to create an organization that would be very different in this field, a stewardship model that would emphasize collegiality."


GeoInsight now has an employee stock ownership plan worth about $300,000, and Gilbert said he will sell his total interest in the firm to employees, perhaps by year's end.


"My ownership stake will then go down to zero, but I'll remain chief executive," he said. "There are exciting times ahead for this still-evolving industry.


Large companies seek to stem costs associated with data center energy use, which is predicted to soar to $7.4 billion in 2011, from $4.5 billion in 2006More than half of large companies are moving beyond talking and into actual planning stages for making their data centers "greener," according to a study that will be released next month by data center operator Digital Realty Trust.



About 55% of companies have established detailed strategies for making their data centers more energy efficient, according to the survey of senior and C-level executives, including CIOs, at 100 companies with at least $1 billion.



"Being green in the data center means saving money on the bottom line," says Jim Smith, VP of engineering of Digital Realty Trust, which conducted the study to evaluate how serious companies are in green initiatives for their data centers. "Most companies will tell you they're on the quest to be green," says Smith.



"But most are beyond just saying that," he says. More than half of those surveyed are actually putting together green data center action plans, have serious management support of such programs, and are providing budgeting to green strategies, he says.



Sixty percent of those surveyed said their green strategy will become an important factor in vendor selection over the next two years.



Strategies include design changes in new data centers, and also operational changes and other modifications in existing ones, says Smith.



In addition to strategies like server consolidation and virtualization that can reduce energy consumption, other beneficial changes include "tune ups" in the data center, including better managing open space between server racks and bypass air flow, as well as making sure data center temperatures aren't calibrated too cold.



"Most tune ups are simple and can help save a lot," says Smith. For instance, safely raising the temperature in data centers three to four degrees can lower cooling costs 10% or more, he says.



A recent report by the U.S. Environmental Protection Agency found that left unchecked, data center energy consumption by the private and public sectors will soar to $7.4 billion in 2011, from $4.5 billion in 2006.



The Digital Realty Trust report will be released in mid-September





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